expam

Contents:

  • Quickstart Tutorial
  • Documentation
  • Additional Dependencies (optional)
  • Tutorials
    • Database Build
    • Classifying metagenomic samples
    • Tree building with expam
    • Graphical output
  • expam’s tree module
expam
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  • Tutorials
  • Edit on GitHub

Tutorials

Contents:

  • Database Build
    • Creating a database
    • Build a tree for the reference database
    • Build the database
  • Classifying metagenomic samples
    • The classification algorithm
    • Phylogenetic classification results
    • Taxonomic results
  • Tree building with expam
    • Part One: Building a tree
    • Part Two: Building a tree in parts
  • Graphical output
    • Features and CLI
    • iTOL integration
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